#1 2022-10-03 18:24:06

jonathonmckaycnl

Member

Registered: 2022-09-16

Posts: 4

Installation Exception while building elements catalog elem.1

Hey All

I've been having trouble installing Code Aster 14.6 for several days now. The current problem I'm having is with the phase where the "elements catalog elem.1" is built. I've seen several similar topics on the forum here, but none being quite the same problem as I'm having.

Here is the output when it fails:

+ build the elements catalog elem.1 using installed aster (from /tmp/install_aster.11879/aster-14.6.0/build/std/release/catalo/cata_ele.ojb)
stdout: # ------------------------------------------------------------------------------------------
# Impression du contenu du fichier de commandes à exécuter :
# ------------------------------------------------------------------------------------------
DEBUT(CATALOGUE=_F(FICHIER='CATAELEM', UNITE=4),
     ERREUR=_F(ERREUR_F='ABORT'), PAR_LOT='NON')
MAJ_CATA(ELEMENT=_F())
FIN()

# ------------------------------------------------------------------------------------------

stderr:
To run manually, use:
BINDIR="/minerva/scratch/users/mckayj/temp_aster/aster_install/14.6/bin"
LIBDIR="/minerva/scratch/users/mckayj/temp_aster/aster_install/14.6/lib64"
PYTHONDIR="/minerva/scratch/users/mckayj/temp_aster/aster_install/14.6/lib/python3.10/site-packages"
export LD_LIBRARY_PATH="/minerva/scratch/users/mckayj/temp_aster/aster_install/public/hdf5-1.10.3/lib:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/med-4.0.0/lib:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/mumps-5.1.2/lib:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/metis-5.1.0/lib:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/tfel-3.2.1/lib:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/scotch-6.0.4/lib:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/hdf5-1.10.3/lib64:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/med-4.0.0/lib64:/minerva/scratch/users/mckayj/temp_aster/aster_install/14.6/lib64:/minerva/scratch/users/mckayj/temp_aster/aster_install/14.6/lib64/aster:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/hdf5-1.10.3/lib:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/med-4.0.0/lib:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/mumps-5.1.2/lib:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/metis-5.1.0/lib:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/tfel-3.2.1/lib:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/scotch-6.0.4/lib:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/hdf5-1.10.3/lib64:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/med-4.0.0/lib64:/minerva/scratch/users/mckayj/temp_aster/aster_install/14.6/lib64:/minerva/scratch/users/mckayj/temp_aster/aster_install/14.6/lib64/aster:/minerva/opt/openmpi-4.1.1-s/lib/openmpi:/minerva/opt/openmpi-4.1.1-s/lib:/minerva/opt/lapack-3.6.0-gcc1010/lib64:/minerva/opt/boost-1.80.0/lib:/minerva/opt/python-3.10.2/lib/python3.10:/minerva/opt/python-3.10.2/lib:/minerva/opt/python-3.10.2:/minerva/opt/openssl-3.0.1/lib64:/minerva/opt/libcerf-1.3/include:/minerva/opt/libcerf-1.3/lib:/minerva/opt/gcc-10.1.0/lib64:/minerva/opt/gcc-10.1.0/lib/gcc:/minerva/opt/gcc-10.1.0/lib:/minerva/opt/zlib-1.2.11/include:/minerva/opt/zlib-1.2.11/lib:/minerva/opt/petsc-3.7.6-gcc-4.9.4-mpich3.2-moose/arch-linux2-c-opt/lib:/minerva/scratch/users/mckayj/temp_aster/aster-full-src-14.6.0:/usr/lib/x86_64-redhat-linux6E/lib64:/usr:/usr/lib/gcc/x86_64-redhat-linux/4.8.5:/minerva/opt/python-3.10.2/bin:/usr/lib64:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/tfel-3.2.1"
export PYTHONPATH="/minerva/scratch/users/mckayj/temp_aster/aster_install/14.6/lib64/aster:/minerva/scratch/users/mckayj/temp_aster/aster-full-src-14.6.0:/minerva/scratch/users/mckayj/temp_aster/aster_install/lib/python3.10/site-packages:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/tfel-3.2.1/lib/python3.10/site-packages"
${BINDIR}/aster /minerva/scratch/users/mckayj/temp_aster/aster_install/14.6/lib64/aster/Execution/E_SUPERV.py -commandes /tmp/install_aster.11879/aster-14.6.0/build/std/release/fort.1 -memjeveux 500 -tpmax 120
Command 'LD_LIBRARY_PATH="/minerva/scratch/users/mckayj/temp_aster/aster_install/public/hdf5-1.10.3/lib:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/med-4.0.0/lib:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/mumps-5.1.2/lib:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/metis-5.1.0/lib:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/tfel-3.2.1/lib:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/scotch-6.0.4/lib:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/hdf5-1.10.3/lib64:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/med-4.0.0/lib64:/minerva/scratch/users/mckayj/temp_aster/aster_install/14.6/lib64:/minerva/scratch/users/mckayj/temp_aster/aster_install/14.6/lib64/aster:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/hdf5-1.10.3/lib:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/med-4.0.0/lib:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/mumps-5.1.2/lib:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/metis-5.1.0/lib:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/tfel-3.2.1/lib:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/scotch-6.0.4/lib:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/hdf5-1.10.3/lib64:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/med-4.0.0/lib64:/minerva/scratch/users/mckayj/temp_aster/aster_install/14.6/lib64:/minerva/scratch/users/mckayj/temp_aster/aster_install/14.6/lib64/aster:/minerva/opt/openmpi-4.1.1-s/lib/openmpi:/minerva/opt/openmpi-4.1.1-s/lib:/minerva/opt/lapack-3.6.0-gcc1010/lib64:/minerva/opt/boost-1.80.0/lib:/minerva/opt/python-3.10.2/lib/python3.10:/minerva/opt/python-3.10.2/lib:/minerva/opt/python-3.10.2:/minerva/opt/openssl-3.0.1/lib64:/minerva/opt/libcerf-1.3/include:/minerva/opt/libcerf-1.3/lib:/minerva/opt/gcc-10.1.0/lib64:/minerva/opt/gcc-10.1.0/lib/gcc:/minerva/opt/gcc-10.1.0/lib:/minerva/opt/zlib-1.2.11/include:/minerva/opt/zlib-1.2.11/lib:/minerva/opt/petsc-3.7.6-gcc-4.9.4-mpich3.2-moose/arch-linux2-c-opt/lib:/minerva/scratch/users/mckayj/temp_aster/aster-full-src-14.6.0:/usr/lib/x86_64-redhat-linux6E/lib64:/usr:/usr/lib/gcc/x86_64-redhat-linux/4.8.5:/minerva/opt/python-3.10.2/bin:/usr/lib64:/minerva/scratch/users/mckayj/temp_aster/aster_install/public/tfel-3.2.1" ${BINDIR}/aster /minerva/scratch/users/mckayj/temp_aster/aster_install/14.6/lib64/aster/Execution/E_SUPERV.py -commandes /tmp/install_aster.11879/aster-14.6.0/build/std/release/fort.1 -memjeveux 500 -tpmax 120' returned -11
EXIT_COMMAND_11879_00000064=1

 *** Exception raised : error during installation

OS is CentOS 7.5
Compiler is GCC 10.1

Any help would be greatly appreciated. Thank you.

jonathonmckaycnl

Member

Registered: 2022-09-16

Posts: 4

Re: Installation Exception while building elements catalog elem.1

After poking at this on and off, I have found another small piece of information: If I run the command(s) that failed by hand, at the very end I also get

Segmentation fault (core dumped)

.

jonathonmckaycnl

Member

Registered: 2022-09-16

Posts: 4

Re: Installation Exception while building elements catalog elem.1

I finally managed to get this fixed.
It turned out ultimately to be the version of Python I was using.
Our system uses Environment Modules to allow easily changing versions of software.
I had been using Python 3.10.2.
Switching to and older version (Python 3.6.1 in my case) solved the problem.