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#1 2016-10-28 10:55:18
- stephaneberger
- Member
- From: Strasbourg (France)
- Registered: 2012-10-15
- Posts: 70
Seg Fault in THER_NON_LINE V12.4 parallel
Hi,
I face a segmentation fault during a THER_NON_LINE.
I'm using a parallel version of code_aster v12.4 compiled with the gnu c/fortran compiler.
Here under an extract of the flasheur message.
Champ stocké <COMPORTHER> à l'instant -6.000000000000e+01 pour le numéro d'ordre 22
Instant de calcul: -4.000000000000e+01
-------------------------------------------------------------------------------------
| ITERATION RESIDU RESIDU ITERATION COEFFICIENT ACTUALISATION |
| RELATIF ABSOLU RECH. LIN. RECH. LIN. MATRICE |
| RESI_GLOB_RELA RESI_GLOB_MAXI RHO TANGENTE |
-------------------------------------------------------------------------------------
Temps CPU consommé dans ce pas de temps : 37.390 s
Instant de calcul: -4.000000000000e+01
-------------------------------------------------------------------------------------
| ITERATION RESIDU RESIDU ITERATION COEFFICIENT ACTUALISATION |
| RELATIF ABSOLU RECH. LIN. RECH. LIN. MATRICE |
| RESI_GLOB_RELA RESI_GLOB_MAXI RHO TANGENTE |
-------------------------------------------------------------------------------------
Instant de calcul: -4.000000000000e+01
-------------------------------------------------------------------------------------
| ITERATION RESIDU RESIDU ITERATION COEFFICIENT ACTUALISATION |
| RELATIF ABSOLU RECH. LIN. RECH. LIN. MATRICE |
| RESI_GLOB_RELA RESI_GLOB_MAXI RHO TANGENTE |
-------------------------------------------------------------------------------------
Champ stocké <COMPORTHER> à l'instant -6.000000000000e+01 pour le numéro d'ordre 22
Temps CPU consommé dans ce pas de temps : 37.400 s
Instant de calcul: -4.000000000000e+01
-------------------------------------------------------------------------------------
| ITERATION RESIDU RESIDU ITERATION COEFFICIENT ACTUALISATION |
| RELATIF ABSOLU RECH. LIN. RECH. LIN. MATRICE |
| RESI_GLOB_RELA RESI_GLOB_MAXI RHO TANGENTE |
-------------------------------------------------------------------------------------
| 1 1.09385E-15 2.32746E-12 0 0.00000E+00 OUI |
-------------------------------------------------------------------------------------
| 1 1.09385E-15 2.32746E-12 0 0.00000E+00 OUI |
-------------------------------------------------------------------------------------
| 1 1.09385E-15 2.32746E-12 0 0.00000E+00 OUI |
-------------------------------------------------------------------------------------
| 1 1.09385E-15 2.32746E-12 0 0.00000E+00 OUI |
-------------------------------------------------------------------------------------
Archivage des champs
Champ stocké <TEMP> à l'instant -4.000000000000e+01 pour le numéro d'ordre 23
Archivage des champs
Champ stocké <TEMP> à l'instant -4.000000000000e+01 pour le numéro d'ordre 23
Champ stocké <COMPORTHER> à l'instant -4.000000000000e+01 pour le numéro d'ordre 23
Champ stocké <COMPORTHER> à l'instant -4.000000000000e+01 pour le numéro d'ordre 23
Temps CPU consommé dans ce pas de temps : 42.130 s
Instant de calcul: -2.000000000000e+01
-------------------------------------------------------------------------------------
| ITERATION RESIDU RESIDU ITERATION COEFFICIENT ACTUALISATION |
| RELATIF ABSOLU RECH. LIN. RECH. LIN. MATRICE |
| RESI_GLOB_RELA RESI_GLOB_MAXI RHO TANGENTE |
-------------------------------------------------------------------------------------
Temps CPU consommé dans ce pas de temps : 42.130 s
Instant de calcul: -2.000000000000e+01
-------------------------------------------------------------------------------------
| ITERATION RESIDU RESIDU ITERATION COEFFICIENT ACTUALISATION |
| RELATIF ABSOLU RECH. LIN. RECH. LIN. MATRICE |
| RESI_GLOB_RELA RESI_GLOB_MAXI RHO TANGENTE |
-------------------------------------------------------------------------------------
Archivage des champs
Champ stocké <TEMP> à l'instant -4.000000000000e+01 pour le numéro d'ordre 23
Archivage des champs
Champ stocké <TEMP> à l'instant -4.000000000000e+01 pour le numéro d'ordre 23
Champ stocké <COMPORTHER> à l'instant -4.000000000000e+01 pour le numéro d'ordre 23
Temps CPU consommé dans ce pas de temps : 42.140 s
Champ stocké <COMPORTHER> à l'instant -4.000000000000e+01 pour le numéro d'ordre 23
Instant de calcul: -2.000000000000e+01
-------------------------------------------------------------------------------------
| ITERATION RESIDU RESIDU ITERATION COEFFICIENT ACTUALISATION |
| RELATIF ABSOLU RECH. LIN. RECH. LIN. MATRICE |
| RESI_GLOB_RELA RESI_GLOB_MAXI RHO TANGENTE |
-------------------------------------------------------------------------------------
Temps CPU consommé dans ce pas de temps : 42.150 s
Instant de calcul: -2.000000000000e+01
-------------------------------------------------------------------------------------
| ITERATION RESIDU RESIDU ITERATION COEFFICIENT ACTUALISATION |
| RELATIF ABSOLU RECH. LIN. RECH. LIN. MATRICE |
| RESI_GLOB_RELA RESI_GLOB_MAXI RHO TANGENTE |
-------------------------------------------------------------------------------------
[AsterX:08827] *** Process received signal ***
[AsterX:08827] Signal: Segmentation fault (11)
[AsterX:08827] Signal code: Address not mapped (1)
[AsterX:08827] Failing at address: 0xfffffffe8559d9f0
[AsterX:08827] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0x10330) [0x7fc6a1434330]
[AsterX:08827] [ 1] /opt/aster/PAR12.4/bin/aster(__Compute2WayPartitionParams+0xd7) [0x2f14a87]
[AsterX:08827] [ 2] /opt/aster/PAR12.4/bin/aster(__MlevelNodeBisection+0xe5) [0x2ef20c5]
[AsterX:08827] [ 3] /opt/aster/PAR12.4/bin/aster(__MlevelNestedDissection+0x17e) [0x2ef2c7e]
[AsterX:08827] [ 4] /opt/aster/PAR12.4/bin/aster(__MlevelNestedDissection+0xed) [0x2ef2bed]
[AsterX:08827] [ 5] /opt/aster/PAR12.4/bin/aster(__MlevelNestedDissection+0xed) [0x2ef2bed]
[AsterX:08827] [ 6] /opt/aster/PAR12.4/bin/aster(__MlevelNestedDissection+0xed) [0x2ef2bed]
[AsterX:08827] [ 7] /opt/aster/PAR12.4/bin/aster(METIS_NodeND+0x205) [0x2ef3ba5]
[AsterX:08827] [ 8] /opt/aster/PAR12.4/bin/aster(dmumps_195_+0x228e) [0x2adf6ca]
[AsterX:08827] [ 9] /opt/aster/PAR12.4/bin/aster(dmumps_26_+0x1488) [0x2b23c45]
[AsterX:08827] [10] /opt/aster/PAR12.4/bin/aster(dmumps_+0x1034) [0x2ab7310]
[AsterX:08827] [11] /opt/aster/PAR12.4/bin/aster(amumpd_+0xd5d) [0x133dfdd]
[AsterX:08827] [12] /opt/aster/PAR12.4/bin/aster(amumph_+0x2187) [0x1341d87]
[AsterX:08827] [13] /opt/aster/PAR12.4/bin/aster(tldlg3_+0xde5) [0x66c1f5]
[AsterX:08827] [14] /opt/aster/PAR12.4/bin/aster(prere1_+0x66d) [0x650f2d]
[AsterX:08827] [15] /opt/aster/PAR12.4/bin/aster(prere2_+0x1e5) [0x651875]
[AsterX:08827] [16] /opt/aster/PAR12.4/bin/aster(preres_+0x158) [0x651e18]
[AsterX:08827] [17] /opt/aster/PAR12.4/bin/aster(nxacmv_+0x6f7) [0xa293d7]
[AsterX:08827] [18] /opt/aster/PAR12.4/bin/aster(op0186_+0x1245) [0x15d9dd5]
[AsterX:08827] [19] /opt/aster/PAR12.4/bin/aster(execop_+0x4c8) [0x18e4658]
[AsterX:08827] [20] /opt/aster/PAR12.4/bin/aster(expass_+0x12) [0x18e4892]
[AsterX:08827] [21] /opt/aster/PAR12.4/bin/aster() [0x5747ea]
[AsterX:08827] [22] /usr/lib/x86_64-linux-gnu/libpython2.7.so.1.0(PyEval_EvalFrameEx+0x4bd4) [0x7fc6a08290d4]
[AsterX:08827] [23] /usr/lib/x86_64-linux-gnu/libpython2.7.so.1.0(PyEval_EvalFrameEx+0x4b59) [0x7fc6a0829059]
[AsterX:08827] [24] /usr/lib/x86_64-linux-gnu/libpython2.7.so.1.0(PyEval_EvalFrameEx+0x4b59) [0x7fc6a0829059]
[AsterX:08827] [25] /usr/lib/x86_64-linux-gnu/libpython2.7.so.1.0(PyEval_EvalFrameEx+0x4b59) [0x7fc6a0829059]
[AsterX:08827] [26] /usr/lib/x86_64-linux-gnu/libpython2.7.so.1.0(PyEval_EvalCodeEx+0x80d) [0x7fc6a082a54d]
[AsterX:08827] [27] /usr/lib/x86_64-linux-gnu/libpython2.7.so.1.0(+0x1c37a5) [0x7fc6a085f7a5]
[AsterX:08827] [28] /usr/lib/x86_64-linux-gnu/libpython2.7.so.1.0(PyObject_Call+0x43) [0x7fc6a07cbd43]
[AsterX:08827] [29] /usr/lib/x86_64-linux-gnu/libpython2.7.so.1.0(PyEval_EvalFrameEx+0xeb1) [0x7fc6a08253b1]
[AsterX:08827] *** End of error message ***
/mnt/disque2/aster-AsterX-interactif.8656-AsterX/global/mpi_script.sh : ligne 37 : 8827 Erreur de segmentation (core dumped) /opt/aster/PAR12.4/bin/aster /opt/aster/PAR12.4/lib/aster/Execution/E_SUPERV.py -commandes fort.1 -max_base 200000 -num_job 8656-AsterX -mode interactif -rep_outils /opt/aster/outils -rep_mat /opt/aster/PAR12.4/share/aster/materiau -rep_dex /opt/aster/PAR12.4/share/aster/datg -suivi_batch -memjeveux 1906.25 -tpmax 358200
EXECUTION_CODE_ASTER_EXIT_8656-AsterX=139
Contenu après l'exécution de /mnt/disque2/aster-AsterX-interactif.8656-AsterX/proc.0 :
.:
total 70544
drwx------ 3 aster aster 4096 oct. 27 18:36 .
drwxrwxr-x 7 aster aster 4096 oct. 27 18:36 ..
-rw-rw-r-- 1 aster aster 2170 oct. 27 18:36 8656-AsterX.export
-rw-rw-r-- 1 aster aster 2380 oct. 27 18:36 config.txt
-rw-rw-r-- 1 aster aster 13029 oct. 27 18:36 fort.1
-rw-rw-r-- 1 aster aster 13029 oct. 27 18:36 fort.1.1
-rw-rw-r-- 1 aster aster 0 oct. 27 18:36 fort.15
-rw-rw-r-- 1 aster aster 18779692 oct. 27 18:36 fort.20
-rw-rw-r-- 1 aster aster 112592 oct. 27 19:00 fort.6
-rw-rw-r-- 1 aster aster 0 oct. 27 18:36 fort.8
-rw-rw-r-- 1 aster aster 0 oct. 27 18:36 fort.9
-rw-rw-r-- 1 aster aster 19928 oct. 27 18:36 fort.95
-rw-rw-r-- 1 aster aster 19660808 oct. 27 18:41 glob.1
-rwxr-xr-x 1 aster aster 2180 oct. 27 18:36 mpi_script.sh
drwxr-xr-x 2 aster aster 4096 oct. 27 18:36 REPE_OUT
-rw-rw-r-- 1 aster aster 35225608 oct. 27 18:58 vola.1
REPE_OUT:
total 8
drwxr-xr-x 2 aster aster 4096 oct. 27 18:36 .
drwx------ 3 aster aster 4096 oct. 27 18:36 ..
--------------------------------------------------------------------------
mpirun has exited due to process rank 0 with PID 8801 on
node AsterX exiting improperly. There are two reasons this could occur:
1. this process did not call "init" before exiting, but others in
the job did. This can cause a job to hang indefinitely while it waits
for all processes to call "init". By rule, if one process calls "init",
then ALL processes must call "init" prior to termination.
2. this process called "init", but exited without calling "finalize".
By rule, all processes that call "init" MUST call "finalize" prior to
exiting or it will be considered an "abnormal termination"
This may have caused other processes in the application to be
terminated by signals sent by mpirun (as reported here).
--------------------------------------------------------------------------
EXIT_COMMAND_8761_00000016=1
<INFO> Exécution Code_Aster terminée, diagnostic : <F>_ABNORMAL_ABORTHere after the commande of THER_NON_LINE
# ------------------------------------------------------------------------------------------
# Commande No : 0067 Concept de type : evol_ther
# ------------------------------------------------------------------------------------------
TEMPE = THER_NON_LINE(MODELE=MOTH,
CHAM_MATER=MAT,
EXCIT=_F(CHARGE=CHTHCHAU,),
ETAT_INIT=_F(VALE=20.0,
PRECISION=1.E-06,
CRITERE='RELATIF',),
SOLVEUR=_F(SYME='NON',
METHODE='MUMPS',
STOP_SINGULIER='OUI',
ELIM_LAGR='LAGR2',
TYPE_RESOL='AUTO',
GESTION_MEMOIRE='AUTO',
FILTRAGE_MATRICE=-1.0,
RENUM='AUTO',
NPREC=8,
PCENT_PIVOT=20,
RESI_RELA=-1.0,
PRETRAITEMENTS='AUTO',
POSTTRAITEMENTS='AUTO',
MIXER_PRECISION='NON',),
NEWTON=_F(ITER_LINE_MAXI=3,
REAC_ITER=1,
RESI_LINE_RELA=1.E-3,),
INCREMENT=_F(LIST_INST=LISTAUTO,
INST_INIT=-500.0,
INST_FIN=0.0,
PRECISION=1.E-06,),
CONVERGENCE=_F(ITER_GLOB_MAXI=60,
RESI_GLOB_RELA=1.E-06,),
PARM_THETA=0.57,
ARCHIVAGE=_F(PRECISION=1.E-06,
CRITERE='RELATIF',),
COMPORTEMENT=_F(RELATION='THER_NL',),
)As I see some error messages related to mumps, I have restarted the solve with MULT_FRONT as solver. The calcul is on progress so far. I will see if it works.
Best Regards
Stephane
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