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#1 2011-10-19 18:13:17

JMB365
Member
Registered: 2008-01-19
Posts: 781

Compile CA_11.0.27/28 with MPI fails

Hello,

I am trying to compile the latest weekly updates 11.0.27 or 28 with MPI and it fails with:

/opt/aster/bin/as_run  --vers=NEW11.0_mpi --make

--------------------------------------------------------------------------------
 Start build in debug mode
--------------------------------------------------------------------------------
 Compilation of source files
<INFO> Compilation from .../bibc/hdf directory
<INFO>   16 files compiled from /opt/aster/NEW11.0_mpi/bibc/hdf
<INFO>   16 files skipped (object more recent than source)

<INFO> Compilation from .../bibc/supervis directory
<INFO>   12 files compiled from /opt/aster/NEW11.0_mpi/bibc/supervis
<INFO>   12 files skipped (object more recent than source)

<INFO> Compilation from .../bibc/utilitai directory
<INFO>   51 files compiled from /opt/aster/NEW11.0_mpi/bibc/utilitai
<INFO>   51 files skipped (object more recent than source)

<INFO> Compilation from .../bibc/include directory
<INFO> no source file in /opt/aster/NEW11.0_mpi/bibc/include

<INFO> Compilation from .../bibc/scotch directory
<INFO>    1 files compiled from /opt/aster/NEW11.0_mpi/bibc/scotch
<INFO>    1 files skipped (object more recent than source)

<INFO> Compilation from .../bibf90/petsc directory
<INFO>    8 files compiled from /opt/aster/NEW11.0_mpi/bibf90/petsc
<INFO>    8 files skipped (object more recent than source)

<INFO> Compilation from .../bibf90/include_mumps-4.7.3 directory
<INFO> no source file in /opt/aster/NEW11.0_mpi/bibf90/include_mumps-4.7.3

<INFO> Compilation from .../bibf90/include_mumps-4.9.2_mpi directory
<INFO> no source file in /opt/aster/NEW11.0_mpi/bibf90/include_mumps-4.9.2_mpi

<INFO> Compilation from .../bibf90/echange directory
<INFO>   49 files compiled from /opt/aster/NEW11.0_mpi/bibf90/echange
<INFO>   49 files skipped (object more recent than source)

<INFO> Compilation from .../bibf90/utilitai directory
<INFO>    9 files compiled from /opt/aster/NEW11.0_mpi/bibf90/utilitai
<INFO>    9 files skipped (object more recent than source)

<INFO> Compilation from .../bibf90/include_mumps-4.9.2 directory
<INFO> no source file in /opt/aster/NEW11.0_mpi/bibf90/include_mumps-4.9.2

<INFO> Compilation from .../bibf90/mumps directory
<INFO>    9 files compiled from /opt/aster/NEW11.0_mpi/bibf90/mumps
<INFO>    9 files skipped (object more recent than source)

<INFO> Compilation from .../bibf90/include_mumps-4.7.3_mpi directory
<INFO> no source file in /opt/aster/NEW11.0_mpi/bibf90/include_mumps-4.7.3_mpi

<INFO> Compilation from .../bibf90/debug directory
<INFO>    1 files compiled from /opt/aster/NEW11.0_mpi/bibf90/debug
<INFO>    1 files skipped (object more recent than source)

<INFO> Compilation from .../bibf90/include_mumps-4.8.4 directory
<INFO> no source file in /opt/aster/NEW11.0_mpi/bibf90/include_mumps-4.8.4

<INFO> Compilation from .../bibf90/include_mumps-4.8.4_mpi directory
<INFO> no source file in /opt/aster/NEW11.0_mpi/bibf90/include_mumps-4.8.4_mpi

<INFO> Compilation from .../bibfor/algorith directory
<INFO> 2468 files compiled from /opt/aster/NEW11.0_mpi/bibfor/algorith
<INFO> 2468 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/modelisa directory
<INFO>  530 files compiled from /opt/aster/NEW11.0_mpi/bibfor/modelisa
<INFO>  530 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/algeline directory
<INFO>  474 files compiled from /opt/aster/NEW11.0_mpi/bibfor/algeline
<INFO>  474 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/echange directory
<INFO>    9 files compiled from /opt/aster/NEW11.0_mpi/bibfor/echange
<INFO>    9 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/soustruc directory
<INFO>   54 files compiled from /opt/aster/NEW11.0_mpi/bibfor/soustruc
<INFO>   54 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/calculel directory
<INFO>  452 files compiled from /opt/aster/NEW11.0_mpi/bibfor/calculel
<INFO>  452 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/elements directory
<INFO> 1241 files compiled from /opt/aster/NEW11.0_mpi/bibfor/elements
<INFO> 1241 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/assembla directory
<INFO>   50 files compiled from /opt/aster/NEW11.0_mpi/bibfor/assembla
<INFO>   50 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/supervis directory
<INFO>   51 files compiled from /opt/aster/NEW11.0_mpi/bibfor/supervis
<INFO>   51 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/utilitai directory
<INFO>  414 files compiled from /opt/aster/NEW11.0_mpi/bibfor/utilitai
<INFO>  414 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/hors_crp directory
<INFO>    1 files compiled from /opt/aster/NEW11.0_mpi/bibfor/hors_crp
<INFO>    1 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/postrele directory
<INFO>  216 files compiled from /opt/aster/NEW11.0_mpi/bibfor/postrele
<INFO>  216 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/jeveux directory
<INFO>   94 files compiled from /opt/aster/NEW11.0_mpi/bibfor/jeveux
<INFO>   94 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/cataelem directory
<INFO>    8 files compiled from /opt/aster/NEW11.0_mpi/bibfor/cataelem
<INFO>    8 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/debug directory
<INFO>   34 files compiled from /opt/aster/NEW11.0_mpi/bibfor/debug
<INFO>   34 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/stbtrias directory
<INFO>   15 files compiled from /opt/aster/NEW11.0_mpi/bibfor/stbtrias
<INFO>   15 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/prepost directory
<INFO>  359 files compiled from /opt/aster/NEW11.0_mpi/bibfor/prepost
<INFO>  359 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/utilifor directory
<INFO>  144 files compiled from /opt/aster/NEW11.0_mpi/bibfor/utilifor
<INFO>  144 files skipped (object more recent than source)

<INFO> Compilation from .../fermetur directory
<INFO> 1002 files compiled from /opt/aster/NEW11.0_mpi/fermetur
<INFO> 1002 files skipped (object more recent than source)

--------------------------------------------------------------------------------
 Archive object files

   0 / 6770 objects added to archive...                                 [ SKIP ]
<INFO> 6770 files archived
<INFO> 6770 files skipped (objects older than library)

--------------------------------------------------------------------------------
 Archive object files

   0 / 1002 objects added to archive...                                 [ SKIP ]
<INFO> 1002 files archived
<INFO> 1002 files skipped (objects older than library)

--------------------------------------------------------------------------------
 Build Code_Aster executable

creating .../NEW11.0_mpi/asterd_mpi...                                  [ SKIP ]
<INFO> executable more recent than objects and libs in arguments
testing executable /opt/aster/NEW11.0_mpi/asterd_mpi...                 [  OK  ]

--------------------------------------------------------------------------------
 Start build in nodebug mode
--------------------------------------------------------------------------------
 Compilation of source files

<INFO> Compilation from .../bibc/hdf directory
<INFO>   16 files compiled from /opt/aster/NEW11.0_mpi/bibc/hdf
<INFO>   16 files skipped (object more recent than source)

<INFO> Compilation from .../bibc/supervis directory
<INFO>   12 files compiled from /opt/aster/NEW11.0_mpi/bibc/supervis
<INFO>   12 files skipped (object more recent than source)

<INFO> Compilation from .../bibc/utilitai directory
<INFO>   51 files compiled from /opt/aster/NEW11.0_mpi/bibc/utilitai
<INFO>   51 files skipped (object more recent than source)

<INFO> Compilation from .../bibc/include directory
<INFO> no source file in /opt/aster/NEW11.0_mpi/bibc/include

<INFO> Compilation from .../bibc/scotch directory
<INFO>    1 files compiled from /opt/aster/NEW11.0_mpi/bibc/scotch
<INFO>    1 files skipped (object more recent than source)

<INFO> Compilation from .../bibf90/petsc directory
<INFO>    8 files compiled from /opt/aster/NEW11.0_mpi/bibf90/petsc
<INFO>    8 files skipped (object more recent than source)

<INFO> Compilation from .../bibf90/include_mumps-4.7.3 directory
<INFO> no source file in /opt/aster/NEW11.0_mpi/bibf90/include_mumps-4.7.3

<INFO> Compilation from .../bibf90/include_mumps-4.9.2_mpi directory
<INFO> no source file in /opt/aster/NEW11.0_mpi/bibf90/include_mumps-4.9.2_mpi

<INFO> Compilation from .../bibf90/echange directory
<INFO>   49 files compiled from /opt/aster/NEW11.0_mpi/bibf90/echange
<INFO>   49 files skipped (object more recent than source)

<INFO> Compilation from .../bibf90/utilitai directory
<INFO>    9 files compiled from /opt/aster/NEW11.0_mpi/bibf90/utilitai
<INFO>    9 files skipped (object more recent than source)

<INFO> Compilation from .../bibf90/include_mumps-4.9.2 directory
<INFO> no source file in /opt/aster/NEW11.0_mpi/bibf90/include_mumps-4.9.2

<INFO> Compilation from .../bibf90/mumps directory
<INFO>    9 files compiled from /opt/aster/NEW11.0_mpi/bibf90/mumps
<INFO>    9 files skipped (object more recent than source)

<INFO> Compilation from .../bibf90/include_mumps-4.7.3_mpi directory
<INFO> no source file in /opt/aster/NEW11.0_mpi/bibf90/include_mumps-4.7.3_mpi

<INFO> Compilation from .../bibf90/debug directory
<INFO>    1 files compiled from /opt/aster/NEW11.0_mpi/bibf90/debug
<INFO>    1 files skipped (object more recent than source)

<INFO> Compilation from .../bibf90/include_mumps-4.8.4 directory
<INFO> no source file in /opt/aster/NEW11.0_mpi/bibf90/include_mumps-4.8.4

<INFO> Compilation from .../bibf90/include_mumps-4.8.4_mpi directory
<INFO> no source file in /opt/aster/NEW11.0_mpi/bibf90/include_mumps-4.8.4_mpi

<INFO> Compilation from .../bibfor/algorith directory
<INFO> 2468 files compiled from /opt/aster/NEW11.0_mpi/bibfor/algorith
<INFO> 2468 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/modelisa directory
<INFO>  530 files compiled from /opt/aster/NEW11.0_mpi/bibfor/modelisa
<INFO>  530 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/algeline directory
<INFO>  474 files compiled from /opt/aster/NEW11.0_mpi/bibfor/algeline
<INFO>  474 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/echange directory
<INFO>    9 files compiled from /opt/aster/NEW11.0_mpi/bibfor/echange
<INFO>    9 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/soustruc directory
<INFO>   54 files compiled from /opt/aster/NEW11.0_mpi/bibfor/soustruc
<INFO>   54 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/calculel directory
<INFO>  452 files compiled from /opt/aster/NEW11.0_mpi/bibfor/calculel
<INFO>  452 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/elements directory
<INFO> 1241 files compiled from /opt/aster/NEW11.0_mpi/bibfor/elements
<INFO> 1241 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/assembla directory
<INFO>   50 files compiled from /opt/aster/NEW11.0_mpi/bibfor/assembla
<INFO>   50 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/supervis directory
<INFO>   51 files compiled from /opt/aster/NEW11.0_mpi/bibfor/supervis
<INFO>   51 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/utilitai directory
<INFO>  414 files compiled from /opt/aster/NEW11.0_mpi/bibfor/utilitai
<INFO>  414 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/hors_crp directory
<INFO>    1 files compiled from /opt/aster/NEW11.0_mpi/bibfor/hors_crp
<INFO>    1 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/postrele directory
<INFO>  216 files compiled from /opt/aster/NEW11.0_mpi/bibfor/postrele
<INFO>  216 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/jeveux directory
<INFO>   94 files compiled from /opt/aster/NEW11.0_mpi/bibfor/jeveux
<INFO>   94 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/cataelem directory
<INFO>    8 files compiled from /opt/aster/NEW11.0_mpi/bibfor/cataelem
<INFO>    8 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/debug directory
<INFO>   34 files compiled from /opt/aster/NEW11.0_mpi/bibfor/debug
<INFO>   34 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/stbtrias directory
<INFO>   15 files compiled from /opt/aster/NEW11.0_mpi/bibfor/stbtrias
<INFO>   15 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/prepost directory
<INFO>  359 files compiled from /opt/aster/NEW11.0_mpi/bibfor/prepost
<INFO>  359 files skipped (object more recent than source)

<INFO> Compilation from .../bibfor/utilifor directory
<INFO>  144 files compiled from /opt/aster/NEW11.0_mpi/bibfor/utilifor
<INFO>  144 files skipped (object more recent than source)

<INFO> Compilation from .../fermetur directory
<INFO> 1002 files compiled from /opt/aster/NEW11.0_mpi/fermetur
<INFO> 1002 files skipped (object more recent than source)

--------------------------------------------------------------------------------
 Archive object files

   0 / 6770 objects added to archive...                                 [ SKIP ]
<INFO> 6770 files archived
<INFO> 6770 files skipped (objects older than library)

--------------------------------------------------------------------------------
 Archive object files

   0 / 1002 objects added to archive...                                 [ SKIP ]
<INFO> 1002 files archived
<INFO> 1002 files skipped (objects older than library)

--------------------------------------------------------------------------------
 Build Code_Aster executable

creating .../NEW11.0_mpi/asteru_mpi...                                  [ SKIP ]
<INFO> executable more recent than objects and libs in arguments
testing executable /opt/aster/NEW11.0_mpi/asteru_mpi...                 [  OK  ]

--------------------------------------------------------------------------------
 Compilation of commands catalogue

copying .../NEW11.0_mpi/catapy...                                       [  OK  ]
adding a symbolic link to /opt/aster/NEW11.0_mpi/asteru_mpi...          [  OK  ]
adding a symbolic link cata.py to /tmp/ks-ubuntu32-build.8421/global/global/cata.py...
                                                                        [  OK  ]
copying /opt/aster/NEW11.0_mpi/elements...                              [ SKIP ]
compilation of commands                                                 [  OK  ]
copying .../Cata/cata.py*...                                            [  OK  ]

OK                 Commands catalogue successfully compiled
--------------------------------------------------------------------------------
 Prepare cata_ele.pickled

build cata_ele.pickled with make_capy_offi.py                           [  OK  ]

<F>_PICKLED_ERROR  error during making cata_ele.pickled
--------------------------------------------------------------------------------
<F> errors previously raised :
<F>_PICKLED_ERROR  error during making cata_ele.pickled
<F>_BUILD_FAILED   Exception raised by MakeAster:
------------------------------------------------------------
Traceback:
Traceback (most recent call last):
  File "/opt/aster/lib/python2.7/site-packages/asrun/maintenance.py", line 750, in MakeAster
    _build_aster(run, conf, False, REPREF, run.get('destdir'), reptrav)
  File "/opt/aster/lib/python2.7/site-packages/asrun/maintenance.py", line 962, in _build_aster
    kret = build.MakePickled(REPREF, reptrav, repdest=destdir, **kargs)
  File "/opt/aster/lib/python2.7/site-packages/asrun/build.py", line 1170, in MakePickled
    '<F>_PICKLED_ERROR')
  File "/opt/aster/lib/python2.7/site-packages/asrun/build.py", line 156, in _mess
    self.run.Mess(msg, cod, store)
  File "/opt/aster/lib/python2.7/site-packages/asrun/run.py", line 640, in Mess
    self.Sortie(4)
  File "/opt/aster/lib/python2.7/site-packages/asrun/run.py", line 679, in Sortie
    raise RunAsterError, exit_code
RunAsterError: 4
------------------------------------------------------------
Exit code : 4

Hope somebody can shed some light !  Thanks.

Regards, JMB

PS: OS is Ubuntu 11.04 (64bit), using ACML, gfortran, gcc, ParMetis, Mpich2, etc as generally described here: http://www.code-aster.org/forum2/viewtopic.php?id=14892

Last edited by JMB365 (2011-10-19 18:15:41)


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