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#1 2011-10-19 18:13:17
- JMB365
- Member
- Registered: 2008-01-19
- Posts: 781
Compile CA_11.0.27/28 with MPI fails
Hello,
I am trying to compile the latest weekly updates 11.0.27 or 28 with MPI and it fails with:
/opt/aster/bin/as_run --vers=NEW11.0_mpi --make
--------------------------------------------------------------------------------
Start build in debug mode
--------------------------------------------------------------------------------
Compilation of source files
<INFO> Compilation from .../bibc/hdf directory
<INFO> 16 files compiled from /opt/aster/NEW11.0_mpi/bibc/hdf
<INFO> 16 files skipped (object more recent than source)
<INFO> Compilation from .../bibc/supervis directory
<INFO> 12 files compiled from /opt/aster/NEW11.0_mpi/bibc/supervis
<INFO> 12 files skipped (object more recent than source)
<INFO> Compilation from .../bibc/utilitai directory
<INFO> 51 files compiled from /opt/aster/NEW11.0_mpi/bibc/utilitai
<INFO> 51 files skipped (object more recent than source)
<INFO> Compilation from .../bibc/include directory
<INFO> no source file in /opt/aster/NEW11.0_mpi/bibc/include
<INFO> Compilation from .../bibc/scotch directory
<INFO> 1 files compiled from /opt/aster/NEW11.0_mpi/bibc/scotch
<INFO> 1 files skipped (object more recent than source)
<INFO> Compilation from .../bibf90/petsc directory
<INFO> 8 files compiled from /opt/aster/NEW11.0_mpi/bibf90/petsc
<INFO> 8 files skipped (object more recent than source)
<INFO> Compilation from .../bibf90/include_mumps-4.7.3 directory
<INFO> no source file in /opt/aster/NEW11.0_mpi/bibf90/include_mumps-4.7.3
<INFO> Compilation from .../bibf90/include_mumps-4.9.2_mpi directory
<INFO> no source file in /opt/aster/NEW11.0_mpi/bibf90/include_mumps-4.9.2_mpi
<INFO> Compilation from .../bibf90/echange directory
<INFO> 49 files compiled from /opt/aster/NEW11.0_mpi/bibf90/echange
<INFO> 49 files skipped (object more recent than source)
<INFO> Compilation from .../bibf90/utilitai directory
<INFO> 9 files compiled from /opt/aster/NEW11.0_mpi/bibf90/utilitai
<INFO> 9 files skipped (object more recent than source)
<INFO> Compilation from .../bibf90/include_mumps-4.9.2 directory
<INFO> no source file in /opt/aster/NEW11.0_mpi/bibf90/include_mumps-4.9.2
<INFO> Compilation from .../bibf90/mumps directory
<INFO> 9 files compiled from /opt/aster/NEW11.0_mpi/bibf90/mumps
<INFO> 9 files skipped (object more recent than source)
<INFO> Compilation from .../bibf90/include_mumps-4.7.3_mpi directory
<INFO> no source file in /opt/aster/NEW11.0_mpi/bibf90/include_mumps-4.7.3_mpi
<INFO> Compilation from .../bibf90/debug directory
<INFO> 1 files compiled from /opt/aster/NEW11.0_mpi/bibf90/debug
<INFO> 1 files skipped (object more recent than source)
<INFO> Compilation from .../bibf90/include_mumps-4.8.4 directory
<INFO> no source file in /opt/aster/NEW11.0_mpi/bibf90/include_mumps-4.8.4
<INFO> Compilation from .../bibf90/include_mumps-4.8.4_mpi directory
<INFO> no source file in /opt/aster/NEW11.0_mpi/bibf90/include_mumps-4.8.4_mpi
<INFO> Compilation from .../bibfor/algorith directory
<INFO> 2468 files compiled from /opt/aster/NEW11.0_mpi/bibfor/algorith
<INFO> 2468 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/modelisa directory
<INFO> 530 files compiled from /opt/aster/NEW11.0_mpi/bibfor/modelisa
<INFO> 530 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/algeline directory
<INFO> 474 files compiled from /opt/aster/NEW11.0_mpi/bibfor/algeline
<INFO> 474 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/echange directory
<INFO> 9 files compiled from /opt/aster/NEW11.0_mpi/bibfor/echange
<INFO> 9 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/soustruc directory
<INFO> 54 files compiled from /opt/aster/NEW11.0_mpi/bibfor/soustruc
<INFO> 54 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/calculel directory
<INFO> 452 files compiled from /opt/aster/NEW11.0_mpi/bibfor/calculel
<INFO> 452 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/elements directory
<INFO> 1241 files compiled from /opt/aster/NEW11.0_mpi/bibfor/elements
<INFO> 1241 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/assembla directory
<INFO> 50 files compiled from /opt/aster/NEW11.0_mpi/bibfor/assembla
<INFO> 50 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/supervis directory
<INFO> 51 files compiled from /opt/aster/NEW11.0_mpi/bibfor/supervis
<INFO> 51 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/utilitai directory
<INFO> 414 files compiled from /opt/aster/NEW11.0_mpi/bibfor/utilitai
<INFO> 414 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/hors_crp directory
<INFO> 1 files compiled from /opt/aster/NEW11.0_mpi/bibfor/hors_crp
<INFO> 1 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/postrele directory
<INFO> 216 files compiled from /opt/aster/NEW11.0_mpi/bibfor/postrele
<INFO> 216 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/jeveux directory
<INFO> 94 files compiled from /opt/aster/NEW11.0_mpi/bibfor/jeveux
<INFO> 94 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/cataelem directory
<INFO> 8 files compiled from /opt/aster/NEW11.0_mpi/bibfor/cataelem
<INFO> 8 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/debug directory
<INFO> 34 files compiled from /opt/aster/NEW11.0_mpi/bibfor/debug
<INFO> 34 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/stbtrias directory
<INFO> 15 files compiled from /opt/aster/NEW11.0_mpi/bibfor/stbtrias
<INFO> 15 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/prepost directory
<INFO> 359 files compiled from /opt/aster/NEW11.0_mpi/bibfor/prepost
<INFO> 359 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/utilifor directory
<INFO> 144 files compiled from /opt/aster/NEW11.0_mpi/bibfor/utilifor
<INFO> 144 files skipped (object more recent than source)
<INFO> Compilation from .../fermetur directory
<INFO> 1002 files compiled from /opt/aster/NEW11.0_mpi/fermetur
<INFO> 1002 files skipped (object more recent than source)
--------------------------------------------------------------------------------
Archive object files
0 / 6770 objects added to archive... [ SKIP ]
<INFO> 6770 files archived
<INFO> 6770 files skipped (objects older than library)
--------------------------------------------------------------------------------
Archive object files
0 / 1002 objects added to archive... [ SKIP ]
<INFO> 1002 files archived
<INFO> 1002 files skipped (objects older than library)
--------------------------------------------------------------------------------
Build Code_Aster executable
creating .../NEW11.0_mpi/asterd_mpi... [ SKIP ]
<INFO> executable more recent than objects and libs in arguments
testing executable /opt/aster/NEW11.0_mpi/asterd_mpi... [ OK ]
--------------------------------------------------------------------------------
Start build in nodebug mode
--------------------------------------------------------------------------------
Compilation of source files
<INFO> Compilation from .../bibc/hdf directory
<INFO> 16 files compiled from /opt/aster/NEW11.0_mpi/bibc/hdf
<INFO> 16 files skipped (object more recent than source)
<INFO> Compilation from .../bibc/supervis directory
<INFO> 12 files compiled from /opt/aster/NEW11.0_mpi/bibc/supervis
<INFO> 12 files skipped (object more recent than source)
<INFO> Compilation from .../bibc/utilitai directory
<INFO> 51 files compiled from /opt/aster/NEW11.0_mpi/bibc/utilitai
<INFO> 51 files skipped (object more recent than source)
<INFO> Compilation from .../bibc/include directory
<INFO> no source file in /opt/aster/NEW11.0_mpi/bibc/include
<INFO> Compilation from .../bibc/scotch directory
<INFO> 1 files compiled from /opt/aster/NEW11.0_mpi/bibc/scotch
<INFO> 1 files skipped (object more recent than source)
<INFO> Compilation from .../bibf90/petsc directory
<INFO> 8 files compiled from /opt/aster/NEW11.0_mpi/bibf90/petsc
<INFO> 8 files skipped (object more recent than source)
<INFO> Compilation from .../bibf90/include_mumps-4.7.3 directory
<INFO> no source file in /opt/aster/NEW11.0_mpi/bibf90/include_mumps-4.7.3
<INFO> Compilation from .../bibf90/include_mumps-4.9.2_mpi directory
<INFO> no source file in /opt/aster/NEW11.0_mpi/bibf90/include_mumps-4.9.2_mpi
<INFO> Compilation from .../bibf90/echange directory
<INFO> 49 files compiled from /opt/aster/NEW11.0_mpi/bibf90/echange
<INFO> 49 files skipped (object more recent than source)
<INFO> Compilation from .../bibf90/utilitai directory
<INFO> 9 files compiled from /opt/aster/NEW11.0_mpi/bibf90/utilitai
<INFO> 9 files skipped (object more recent than source)
<INFO> Compilation from .../bibf90/include_mumps-4.9.2 directory
<INFO> no source file in /opt/aster/NEW11.0_mpi/bibf90/include_mumps-4.9.2
<INFO> Compilation from .../bibf90/mumps directory
<INFO> 9 files compiled from /opt/aster/NEW11.0_mpi/bibf90/mumps
<INFO> 9 files skipped (object more recent than source)
<INFO> Compilation from .../bibf90/include_mumps-4.7.3_mpi directory
<INFO> no source file in /opt/aster/NEW11.0_mpi/bibf90/include_mumps-4.7.3_mpi
<INFO> Compilation from .../bibf90/debug directory
<INFO> 1 files compiled from /opt/aster/NEW11.0_mpi/bibf90/debug
<INFO> 1 files skipped (object more recent than source)
<INFO> Compilation from .../bibf90/include_mumps-4.8.4 directory
<INFO> no source file in /opt/aster/NEW11.0_mpi/bibf90/include_mumps-4.8.4
<INFO> Compilation from .../bibf90/include_mumps-4.8.4_mpi directory
<INFO> no source file in /opt/aster/NEW11.0_mpi/bibf90/include_mumps-4.8.4_mpi
<INFO> Compilation from .../bibfor/algorith directory
<INFO> 2468 files compiled from /opt/aster/NEW11.0_mpi/bibfor/algorith
<INFO> 2468 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/modelisa directory
<INFO> 530 files compiled from /opt/aster/NEW11.0_mpi/bibfor/modelisa
<INFO> 530 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/algeline directory
<INFO> 474 files compiled from /opt/aster/NEW11.0_mpi/bibfor/algeline
<INFO> 474 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/echange directory
<INFO> 9 files compiled from /opt/aster/NEW11.0_mpi/bibfor/echange
<INFO> 9 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/soustruc directory
<INFO> 54 files compiled from /opt/aster/NEW11.0_mpi/bibfor/soustruc
<INFO> 54 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/calculel directory
<INFO> 452 files compiled from /opt/aster/NEW11.0_mpi/bibfor/calculel
<INFO> 452 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/elements directory
<INFO> 1241 files compiled from /opt/aster/NEW11.0_mpi/bibfor/elements
<INFO> 1241 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/assembla directory
<INFO> 50 files compiled from /opt/aster/NEW11.0_mpi/bibfor/assembla
<INFO> 50 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/supervis directory
<INFO> 51 files compiled from /opt/aster/NEW11.0_mpi/bibfor/supervis
<INFO> 51 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/utilitai directory
<INFO> 414 files compiled from /opt/aster/NEW11.0_mpi/bibfor/utilitai
<INFO> 414 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/hors_crp directory
<INFO> 1 files compiled from /opt/aster/NEW11.0_mpi/bibfor/hors_crp
<INFO> 1 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/postrele directory
<INFO> 216 files compiled from /opt/aster/NEW11.0_mpi/bibfor/postrele
<INFO> 216 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/jeveux directory
<INFO> 94 files compiled from /opt/aster/NEW11.0_mpi/bibfor/jeveux
<INFO> 94 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/cataelem directory
<INFO> 8 files compiled from /opt/aster/NEW11.0_mpi/bibfor/cataelem
<INFO> 8 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/debug directory
<INFO> 34 files compiled from /opt/aster/NEW11.0_mpi/bibfor/debug
<INFO> 34 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/stbtrias directory
<INFO> 15 files compiled from /opt/aster/NEW11.0_mpi/bibfor/stbtrias
<INFO> 15 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/prepost directory
<INFO> 359 files compiled from /opt/aster/NEW11.0_mpi/bibfor/prepost
<INFO> 359 files skipped (object more recent than source)
<INFO> Compilation from .../bibfor/utilifor directory
<INFO> 144 files compiled from /opt/aster/NEW11.0_mpi/bibfor/utilifor
<INFO> 144 files skipped (object more recent than source)
<INFO> Compilation from .../fermetur directory
<INFO> 1002 files compiled from /opt/aster/NEW11.0_mpi/fermetur
<INFO> 1002 files skipped (object more recent than source)
--------------------------------------------------------------------------------
Archive object files
0 / 6770 objects added to archive... [ SKIP ]
<INFO> 6770 files archived
<INFO> 6770 files skipped (objects older than library)
--------------------------------------------------------------------------------
Archive object files
0 / 1002 objects added to archive... [ SKIP ]
<INFO> 1002 files archived
<INFO> 1002 files skipped (objects older than library)
--------------------------------------------------------------------------------
Build Code_Aster executable
creating .../NEW11.0_mpi/asteru_mpi... [ SKIP ]
<INFO> executable more recent than objects and libs in arguments
testing executable /opt/aster/NEW11.0_mpi/asteru_mpi... [ OK ]
--------------------------------------------------------------------------------
Compilation of commands catalogue
copying .../NEW11.0_mpi/catapy... [ OK ]
adding a symbolic link to /opt/aster/NEW11.0_mpi/asteru_mpi... [ OK ]
adding a symbolic link cata.py to /tmp/ks-ubuntu32-build.8421/global/global/cata.py...
[ OK ]
copying /opt/aster/NEW11.0_mpi/elements... [ SKIP ]
compilation of commands [ OK ]
copying .../Cata/cata.py*... [ OK ]
OK Commands catalogue successfully compiled
--------------------------------------------------------------------------------
Prepare cata_ele.pickled
build cata_ele.pickled with make_capy_offi.py [ OK ]
<F>_PICKLED_ERROR error during making cata_ele.pickled
--------------------------------------------------------------------------------
<F> errors previously raised :
<F>_PICKLED_ERROR error during making cata_ele.pickled
<F>_BUILD_FAILED Exception raised by MakeAster:
------------------------------------------------------------
Traceback:
Traceback (most recent call last):
File "/opt/aster/lib/python2.7/site-packages/asrun/maintenance.py", line 750, in MakeAster
_build_aster(run, conf, False, REPREF, run.get('destdir'), reptrav)
File "/opt/aster/lib/python2.7/site-packages/asrun/maintenance.py", line 962, in _build_aster
kret = build.MakePickled(REPREF, reptrav, repdest=destdir, **kargs)
File "/opt/aster/lib/python2.7/site-packages/asrun/build.py", line 1170, in MakePickled
'<F>_PICKLED_ERROR')
File "/opt/aster/lib/python2.7/site-packages/asrun/build.py", line 156, in _mess
self.run.Mess(msg, cod, store)
File "/opt/aster/lib/python2.7/site-packages/asrun/run.py", line 640, in Mess
self.Sortie(4)
File "/opt/aster/lib/python2.7/site-packages/asrun/run.py", line 679, in Sortie
raise RunAsterError, exit_code
RunAsterError: 4
------------------------------------------------------------
Exit code : 4Hope somebody can shed some light ! Thanks.
Regards, JMB
PS: OS is Ubuntu 11.04 (64bit), using ACML, gfortran, gcc, ParMetis, Mpich2, etc as generally described here: http://www.code-aster.org/forum2/viewtopic.php?id=14892
Last edited by JMB365 (2011-10-19 18:15:41)
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